IL_8Y0U_016

3D structure

PDB id

8Y0U (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with STM1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

UUU*AUA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y0U_016 not in the Motif Atlas

Homologous match to IL_5TBW_016

Geometric discrepancy: 0.1643

The information below is about IL_5TBW_016

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

8Y0U|1|C1|U|429
8Y0U|1|C1|U|430
8Y0U|1|C1|U|431
*
8Y0U|1|C1|A|628
8Y0U|1|C1|U|629
8Y0U|1|C1|A|630

Current chains

Chain C1

25S rRNA

Nearby chains

Chain C3

5.8S ribosomal RNA; 5.8S rRNA

Chain LO

Large ribosomal subunit protein uL13A

Chain Le

Large ribosomal subunit protein eL32

Chain Lf

Large ribosomal subunit protein eL33A