3D structure

PDB id
8Y0U (explore in PDB, NAKB, or RNA 3D Hub)
Description
dormant ribosome with STM1
Experimental method
ELECTRON MICROSCOPY
Resolution
3.59 Å

Loop

Sequence
UG*CAG
Length
5 nucleotides
Bulged bases
8Y0U|1|C1|A|578
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8Y0U_018 not in the Motif Atlas
Homologous match to IL_5TBW_018
Geometric discrepancy: 0.1466
The information below is about IL_5TBW_018
Detailed Annotation
Single bulged A
Broad Annotation
No text annotation
Motif group
IL_31462.1
Basepair signature
cWW-L-cWW
Number of instances in this motif group
127

Unit IDs

8Y0U|1|C1|U|512
8Y0U|1|C1|G|513
*
8Y0U|1|C1|C|577
8Y0U|1|C1|A|578
8Y0U|1|C1|G|579

Current chains

Chain C1
25S rRNA

Nearby chains

Chain LC
Large ribosomal subunit protein uL4A
Chain LF
Large ribosomal subunit protein uL30A

Coloring options:


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