3D structure

PDB id
8Y0U (explore in PDB, NAKB, or RNA 3D Hub)
Description
dormant ribosome with STM1
Experimental method
ELECTRON MICROSCOPY
Resolution
3.59 Å

Loop

Sequence
GGAUAAAUC*GGAAUAC
Length
16 nucleotides
Bulged bases
8Y0U|1|C1|A|519, 8Y0U|1|C1|U|520
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8Y0U_019 not in the Motif Atlas
Homologous match to IL_5TBW_019
Geometric discrepancy: 0.104
The information below is about IL_5TBW_019
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_74024.1
Basepair signature
cWW-L-R-L-R-L-R-L-R-L-R-cWW
Number of instances in this motif group
2

Unit IDs

8Y0U|1|C1|G|517
8Y0U|1|C1|G|518
8Y0U|1|C1|A|519
8Y0U|1|C1|U|520
8Y0U|1|C1|A|521
8Y0U|1|C1|A|522
8Y0U|1|C1|A|523
8Y0U|1|C1|U|524
8Y0U|1|C1|C|525
*
8Y0U|1|C1|G|567
8Y0U|1|C1|G|568
8Y0U|1|C1|A|569
8Y0U|1|C1|A|570
8Y0U|1|C1|U|571
8Y0U|1|C1|A|572
8Y0U|1|C1|C|573

Current chains

Chain C1
25S rRNA

Nearby chains

Chain LC
Large ribosomal subunit protein uL4A
Chain LF
Large ribosomal subunit protein uL30A
Chain LM
Large ribosomal subunit protein eL14A
Chain LS
Large ribosomal subunit protein eL20A

Coloring options:


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