IL_8Y0U_022

3D structure

PDB id

8Y0U (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with STM1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

GUC*GCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y0U_022 not in the Motif Atlas

Homologous match to IL_8C3A_023

Geometric discrepancy: 0.0779

The information below is about IL_8C3A_023

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

8Y0U|1|C1|G|668
8Y0U|1|C1|U|669
8Y0U|1|C1|C|670
*
8Y0U|1|C1|G|792
8Y0U|1|C1|C|793
8Y0U|1|C1|U|794

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LC

Large ribosomal subunit protein uL4A

Chain LL

Large ribosomal subunit protein eL13A

Chain LQ

Large ribosomal subunit protein eL18A

Chain La

Large ribosomal subunit protein uL15