IL_8Y0U_027

3D structure

PDB id

8Y0U (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with STM1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

CUGAUG*CGGAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y0U_027 not in the Motif Atlas

Homologous match to IL_8C3A_028

Geometric discrepancy: 0.144

The information below is about IL_8C3A_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8Y0U|1|C1|C|758
8Y0U|1|C1|U|759
8Y0U|1|C1|G|760
8Y0U|1|C1|A|761
8Y0U|1|C1|U|762
8Y0U|1|C1|G|763
*
8Y0U|1|C1|C|768
8Y0U|1|C1|G|769
8Y0U|1|C1|G|770
8Y0U|1|C1|A|771
8Y0U|1|C1|U|772
8Y0U|1|C1|G|773

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LL

Large ribosomal subunit protein eL13A

Chain La

Large ribosomal subunit protein uL15

Chain Lo

Large ribosomal subunit protein eL42A