3D structure

PDB id
8Y0U (explore in PDB, NAKB, or RNA 3D Hub)
Description
dormant ribosome with STM1
Experimental method
ELECTRON MICROSCOPY
Resolution
3.59 Å

Loop

Sequence
AGU*AU
Length
5 nucleotides
Bulged bases
8Y0U|1|C1|G|984
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8Y0U_038 not in the Motif Atlas
Homologous match to IL_5TBW_037
Geometric discrepancy: 0.1414
The information below is about IL_5TBW_037
Detailed Annotation
Single bulged G
Broad Annotation
No text annotation
Motif group
IL_00225.7
Basepair signature
cWW-L-cWW
Number of instances in this motif group
49

Unit IDs

8Y0U|1|C1|A|983
8Y0U|1|C1|G|984
8Y0U|1|C1|U|985
*
8Y0U|1|C1|A|1099
8Y0U|1|C1|U|1100

Current chains

Chain C1
25S rRNA

Nearby chains

Chain LF
Large ribosomal subunit protein uL30A
Chain LT
Large ribosomal subunit protein eL21A
Chain Lb
Large ribosomal subunit protein eL29

Coloring options:


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