IL_8Y0U_046

3D structure

PDB id

8Y0U (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with STM1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

UUAC*GAA

Length

7 nucleotides

Bulged bases

8Y0U|1|C1|A|1075

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y0U_046 not in the Motif Atlas

Geometric match to IL_4V9F_097

Geometric discrepancy: 0.326

The information below is about IL_4V9F_097

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

27

Unit IDs

8Y0U|1|C1|U|1073
8Y0U|1|C1|U|1074
8Y0U|1|C1|A|1075
8Y0U|1|C1|C|1076
*
8Y0U|1|C1|G|1083
8Y0U|1|C1|A|1084
8Y0U|1|C1|A|1085

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LD

Large ribosomal subunit protein uL18

Chain LT

Large ribosomal subunit protein eL21A

Chain Lb

Large ribosomal subunit protein eL29