IL_8Y0U_048

3D structure

PDB id

8Y0U (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with STM1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

UUU*AGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y0U_048 not in the Motif Atlas

Homologous match to IL_8C3A_050

Geometric discrepancy: 0.0979

The information below is about IL_8C3A_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_52767.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

8Y0U|1|C1|U|1123
8Y0U|1|C1|U|1124
8Y0U|1|C1|U|1125
*
8Y0U|1|C1|A|1133
8Y0U|1|C1|G|1134
8Y0U|1|C1|A|1135

Current chains

Chain C1

25S rRNA

Nearby chains

Chain C4

5S ribosomal RNA; 5S rRNA

Chain LI

Large ribosomal subunit protein uL16

Chain LT

Large ribosomal subunit protein eL21A

Chain Lb

Large ribosomal subunit protein eL29