IL_8Y0U_051
3D structure
- PDB id
- 8Y0U (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- dormant ribosome with STM1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.59 Å
Loop
- Sequence
- AUA*UU
- Length
- 5 nucleotides
- Bulged bases
- 8Y0U|1|C1|U|1181
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8Y0U_051 not in the Motif Atlas
- Homologous match to IL_8C3A_053
- Geometric discrepancy: 0.2894
- The information below is about IL_8C3A_053
- Detailed Annotation
- Single bulged U
- Broad Annotation
- No text annotation
- Motif group
- IL_83039.19
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 123
Unit IDs
8Y0U|1|C1|A|1180
8Y0U|1|C1|U|1181
8Y0U|1|C1|A|1182
*
8Y0U|1|C1|U|1324
8Y0U|1|C1|U|1325
Current chains
- Chain C1
- 25S rRNA
Nearby chains
- Chain LF
- Large ribosomal subunit protein uL30A
- Chain LM
- Large ribosomal subunit protein eL14A
- Chain LO
- Large ribosomal subunit protein uL13A
- Chain LS
- Large ribosomal subunit protein eL20A
- Chain Lf
- Large ribosomal subunit protein eL33A
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