IL_8Y0U_054

3D structure

PDB id

8Y0U (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with STM1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

8Y0U|1|C1|U|1208

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y0U_054 not in the Motif Atlas

Homologous match to IL_8C3A_056

Geometric discrepancy: 0.2275

The information below is about IL_8C3A_056

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

8Y0U|1|C1|G|1207
8Y0U|1|C1|U|1208
8Y0U|1|C1|G|1209
*
8Y0U|1|C1|C|1296
8Y0U|1|C1|C|1297

Current chains

Chain C1

25S rRNA

Nearby chains

Chain C4

5S ribosomal RNA; 5S rRNA

Chain LH

Large ribosomal subunit protein uL6A

Chain LS

Large ribosomal subunit protein eL20A

Chain Lm

Ubiquitin-ribosomal protein eL40A fusion protein