IL_8Y0U_057

3D structure

PDB id

8Y0U (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with STM1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

8Y0U|1|C1|A|1263

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y0U_057 not in the Motif Atlas

Geometric match to IL_5D8H_003

Geometric discrepancy: 0.2362

The information below is about IL_5D8H_003

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_51387.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

21

Unit IDs

8Y0U|1|C1|G|1262
8Y0U|1|C1|A|1263
8Y0U|1|C1|G|1264
8Y0U|1|C1|U|1265
8Y0U|1|C1|G|1266
*
8Y0U|1|C1|C|1275
8Y0U|1|C1|U|1276
8Y0U|1|C1|C|1277

Current chains

Chain C1

25S rRNA

Nearby chains

Chain P0

Large ribosomal subunit protein uL10

Chain P2

Large ribosomal subunit protein uL11A