IL_8Y0U_060
3D structure
- PDB id
- 8Y0U (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- dormant ribosome with STM1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.59 Å
Loop
- Sequence
- UGACGAAG*UCGAA
- Length
- 13 nucleotides
- Bulged bases
- 8Y0U|1|C1|C|1391
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8Y0U_060 not in the Motif Atlas
- Homologous match to IL_5TBW_059
- Geometric discrepancy: 0.1263
- The information below is about IL_5TBW_059
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_70923.5
- Basepair signature
- cWW-cWW-tSS-tSH-tHS-cWW-tHS
- Number of instances in this motif group
- 32
Unit IDs
8Y0U|1|C1|U|1388
8Y0U|1|C1|G|1389
8Y0U|1|C1|A|1390
8Y0U|1|C1|C|1391
8Y0U|1|C1|G|1392
8Y0U|1|C1|A|1393
8Y0U|1|C1|A|1394
8Y0U|1|C1|G|1395
*
8Y0U|1|C1|U|1415
8Y0U|1|C1|C|1416
8Y0U|1|C1|G|1417
8Y0U|1|C1|A|1418
8Y0U|1|C1|A|1419
Current chains
- Chain C1
- 25S rRNA
Nearby chains
- Chain C3
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LC
- Large ribosomal subunit protein uL4A
- Chain LE
- Large ribosomal subunit protein eL6B
- Chain LP
- Large ribosomal subunit protein uL22A
- Chain LY
- Large ribosomal subunit protein uL24A
- Chain Le
- Large ribosomal subunit protein eL32
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