3D structure

PDB id
8Y0U (explore in PDB, NAKB, or RNA 3D Hub)
Description
dormant ribosome with STM1
Experimental method
ELECTRON MICROSCOPY
Resolution
3.59 Å

Loop

Sequence
AAG*CCU
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8Y0U_076 not in the Motif Atlas
Homologous match to IL_5TBW_075
Geometric discrepancy: 0.2113
The information below is about IL_5TBW_075
Detailed Annotation
Isolated tWW turn
Broad Annotation
No text annotation
Motif group
IL_54997.8
Basepair signature
cWW-tWW-cWW
Number of instances in this motif group
8

Unit IDs

8Y0U|1|C1|A|1895
8Y0U|1|C1|A|1896
8Y0U|1|C1|G|1897
*
8Y0U|1|C1|C|2338
8Y0U|1|C1|C|2339
8Y0U|1|C1|U|2340

Current chains

Chain C1
25S rRNA

Nearby chains

Chain LB
Large ribosomal subunit protein uL3
Chain LV
Large ribosomal subunit protein uL14A
Chain LW
Large ribosomal subunit protein eL24A

Coloring options:


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