IL_8Y0U_081

3D structure

PDB id

8Y0U (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with STM1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

GG*CAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y0U_081 not in the Motif Atlas

Homologous match to IL_5TBW_080

Geometric discrepancy: 0.2296

The information below is about IL_5TBW_080

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_74125.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

8Y0U|1|C1|G|1947
8Y0U|1|C1|G|1948
*
8Y0U|1|C1|C|2098
8Y0U|1|C1|A|2099
8Y0U|1|C1|A|2100
8Y0U|1|C1|C|2101

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LR

Large ribosomal subunit protein eL19A