IL_8Y0U_087

3D structure

PDB id

8Y0U (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with STM1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

GAAUG*CGC

Length

8 nucleotides

Bulged bases

8Y0U|1|C1|U|2209

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y0U_087 not in the Motif Atlas

Homologous match to IL_8C3A_092

Geometric discrepancy: 0.4915

The information below is about IL_8C3A_092

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_58579.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

8Y0U|1|C1|G|2206
8Y0U|1|C1|A|2207
8Y0U|1|C1|A|2208
8Y0U|1|C1|U|2209
8Y0U|1|C1|G|2210
*
8Y0U|1|C1|C|2235
8Y0U|1|C1|G|2236
8Y0U|1|C1|C|2237

Current chains

Chain C1

25S rRNA

Nearby chains

Chain 5

Eukaryotic translation initiation factor 5A-1

Chain C2

Small subunit ribosomal RNA; SSU rRNA

Chain LA

Large ribosomal subunit protein uL2A

Chain SB

40S ribosomal protein S1-A