IL_8Y0U_092

3D structure

PDB id

8Y0U (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with STM1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

GAA*UACC

Length

7 nucleotides

Bulged bases

8Y0U|1|C1|A|2397, 8Y0U|1|C1|C|2983

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y0U_092 not in the Motif Atlas

Homologous match to IL_5TBW_092

Geometric discrepancy: 0.1087

The information below is about IL_5TBW_092

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_54678.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

8Y0U|1|C1|G|2396
8Y0U|1|C1|A|2397
8Y0U|1|C1|A|2398
*
8Y0U|1|C1|U|2981
8Y0U|1|C1|A|2982
8Y0U|1|C1|C|2983
8Y0U|1|C1|C|2984

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain LP

Large ribosomal subunit protein uL22A