IL_8Y0U_095

3D structure

PDB id

8Y0U (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with STM1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

UAG*UGGG

Length

7 nucleotides

Bulged bases

8Y0U|1|C1|G|2606

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y0U_095 not in the Motif Atlas

Homologous match to IL_5TBW_095

Geometric discrepancy: 0.1099

The information below is about IL_5TBW_095

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_38958.10

Basepair signature

cWW-cWW-cWW-tHS

Number of instances in this motif group

9

Unit IDs

8Y0U|1|C1|U|2423
8Y0U|1|C1|A|2424
8Y0U|1|C1|G|2425
*
8Y0U|1|C1|U|2604
8Y0U|1|C1|G|2605
8Y0U|1|C1|G|2606
8Y0U|1|C1|G|2607

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LA

Large ribosomal subunit protein uL2A

Chain LN

Large ribosomal subunit protein eL15A

Chain Lo

Large ribosomal subunit protein eL42A