IL_8Y0U_096

3D structure

PDB id

8Y0U (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with STM1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

CA*UAG

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y0U_096 not in the Motif Atlas

Geometric match to IL_5J7L_247

Geometric discrepancy: 0.2936

The information below is about IL_5J7L_247

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_51454.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

45

Unit IDs

8Y0U|1|C1|C|2444
8Y0U|1|C1|A|2445
*
8Y0U|1|C1|U|2501
8Y0U|1|C1|A|2502
8Y0U|1|C1|G|2503

Current chains

Chain C1

25S rRNA

Nearby chains

Chain Li

Large ribosomal subunit protein eL36A