IL_8Y0U_105

3D structure

PDB id

8Y0U (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with STM1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

GUCC*GC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y0U_105 not in the Motif Atlas

Homologous match to IL_8C3A_110

Geometric discrepancy: 0.2044

The information below is about IL_8C3A_110

Detailed Annotation

Single stack bend

Broad Annotation

Single stack bend

Motif group

IL_39137.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

8Y0U|1|C1|G|2770
8Y0U|1|C1|U|2771
8Y0U|1|C1|C|2772
8Y0U|1|C1|C|2773
*
8Y0U|1|C1|G|2787
8Y0U|1|C1|C|2788

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LL

Large ribosomal subunit protein eL13A

Chain LQ

Large ribosomal subunit protein eL18A

Chain La

Large ribosomal subunit protein uL15

Chain Lo

Large ribosomal subunit protein eL42A