IL_8Y0U_113

3D structure

PDB id

8Y0U (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with STM1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

UA*UAAG

Length

6 nucleotides

Bulged bases

8Y0U|1|C1|A|2911

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y0U_113 not in the Motif Atlas

Homologous match to IL_8C3A_119

Geometric discrepancy: 0.1636

The information below is about IL_8C3A_119

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_95601.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

9

Unit IDs

8Y0U|1|C1|U|2891
8Y0U|1|C1|A|2892
*
8Y0U|1|C1|U|2909
8Y0U|1|C1|A|2910
8Y0U|1|C1|A|2911
8Y0U|1|C1|G|2912

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LH

Large ribosomal subunit protein uL6A

Chain Lm

Ubiquitin-ribosomal protein eL40A fusion protein