IL_8Y0U_115

3D structure

PDB id

8Y0U (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with STM1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

8Y0U|1|C1|A|2971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y0U_115 not in the Motif Atlas

Geometric match to IL_7RQB_101

Geometric discrepancy: 0.1759

The information below is about IL_7RQB_101

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_37497.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

118

Unit IDs

8Y0U|1|C1|C|2960
8Y0U|1|C1|G|2961
*
8Y0U|1|C1|C|2970
8Y0U|1|C1|A|2971
8Y0U|1|C1|G|2972

Current chains

Chain C1

25S rRNA

Nearby chains

Chain 5

Eukaryotic translation initiation factor 5A-1

Chain LA

Large ribosomal subunit protein uL2A

Chain LI

Large ribosomal subunit protein uL16