IL_8Y0U_129

3D structure

PDB id

8Y0U (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with STM1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

CAACG*UUG

Length

8 nucleotides

Bulged bases

8Y0U|1|C1|U|3259

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y0U_129 not in the Motif Atlas

Homologous match to IL_8C3A_133

Geometric discrepancy: 0.2012

The information below is about IL_8C3A_133

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60154.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

3

Unit IDs

8Y0U|1|C1|C|3225
8Y0U|1|C1|A|3226
8Y0U|1|C1|A|3227
8Y0U|1|C1|C|3228
8Y0U|1|C1|G|3229
*
8Y0U|1|C1|U|3258
8Y0U|1|C1|U|3259
8Y0U|1|C1|G|3260

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LE

Large ribosomal subunit protein eL6B

Chain LM

Large ribosomal subunit protein eL14A

Chain Lf

Large ribosomal subunit protein eL33A