IL_8Y0U_158

3D structure

PDB id

8Y0U (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with STM1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

UUUCGA*UG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y0U_158 not in the Motif Atlas

Homologous match to IL_8C3A_411

Geometric discrepancy: 0.2447

The information below is about IL_8C3A_411

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_71854.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

8Y0U|1|C2|U|318
8Y0U|1|C2|U|319
8Y0U|1|C2|U|320
8Y0U|1|C2|C|321
8Y0U|1|C2|G|322
8Y0U|1|C2|A|323
*
8Y0U|1|C2|U|345
8Y0U|1|C2|G|346

Current chains

Chain C2

18S rRNA

Nearby chains

Chain C1

Large subunit ribosomal RNA; LSU rRNA

Chain SI

40S ribosomal protein S8-A

Chain SL

Small ribosomal subunit protein uS17A