IL_8Y0U_173

3D structure

PDB id

8Y0U (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with STM1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y0U_173 not in the Motif Atlas

Homologous match to IL_8C3A_426

Geometric discrepancy: 0.1699

The information below is about IL_8C3A_426

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.4

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

8Y0U|1|C2|G|616
8Y0U|1|C2|U|617
8Y0U|1|C2|U|618
8Y0U|1|C2|A|619
8Y0U|1|C2|A|620
8Y0U|1|C2|A|621
8Y0U|1|C2|A|622
*
8Y0U|1|C2|U|1104
8Y0U|1|C2|C|1105

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SX

40S ribosomal protein S23-A

Chain Sa

Small ribosomal subunit protein eS26B