IL_8Y0U_207

3D structure

PDB id

8Y0U (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with STM1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

UGGU*ACGA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y0U_207 not in the Motif Atlas

Geometric match to IL_3CUL_002

Geometric discrepancy: 0.2473

The information below is about IL_3CUL_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

8Y0U|1|C2|U|1290
8Y0U|1|C2|G|1291
8Y0U|1|C2|G|1292
8Y0U|1|C2|U|1293
*
8Y0U|1|C2|A|1322
8Y0U|1|C2|C|1323
8Y0U|1|C2|G|1324
8Y0U|1|C2|A|1325

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SA

Small ribosomal subunit protein uS2A

Chain SC

40S ribosomal protein S2