IL_8Y0U_209

3D structure

PDB id

8Y0U (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with STM1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

CUAC*GAG

Length

7 nucleotides

Bulged bases

8Y0U|1|C2|U|1340

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y0U_209 not in the Motif Atlas

Homologous match to IL_4V88_455

Geometric discrepancy: 0.1434

The information below is about IL_4V88_455

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

8Y0U|1|C2|C|1339
8Y0U|1|C2|U|1340
8Y0U|1|C2|A|1341
8Y0U|1|C2|C|1342
*
8Y0U|1|C2|G|1383
8Y0U|1|C2|A|1384
8Y0U|1|C2|G|1385

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SQ

Small ribosomal subunit protein uS9A

Chain SU

Small ribosomal subunit protein uS10