IL_8Y0U_213
3D structure
- PDB id
- 8Y0U (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- dormant ribosome with STM1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.59 Å
Loop
- Sequence
- GCCAGCGA*UUGUGAAAC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8Y0U_213 not in the Motif Atlas
- Homologous match to IL_8C3A_466
- Geometric discrepancy: 0.1698
- The information below is about IL_8C3A_466
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_48143.1
- Basepair signature
- cWW-tWW-L-R-L-R-L-R-L-tHW-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
8Y0U|1|C2|G|1480
8Y0U|1|C2|C|1481
8Y0U|1|C2|C|1482
8Y0U|1|C2|A|1483
8Y0U|1|C2|G|1484
8Y0U|1|C2|C|1485
8Y0U|1|C2|G|1486
8Y0U|1|C2|A|1487
*
8Y0U|1|C2|U|1519
8Y0U|1|C2|U|1520
8Y0U|1|C2|G|1521
8Y0U|1|C2|U|1522
8Y0U|1|C2|G|1523
8Y0U|1|C2|A|1524
8Y0U|1|C2|A|1525
8Y0U|1|C2|A|1526
8Y0U|1|C2|C|1527
Current chains
- Chain C2
- 18S rRNA
Nearby chains
- Chain SQ
- Small ribosomal subunit protein uS9A
- Chain ST
- Small ribosomal subunit protein eS19A
- Chain SU
- Small ribosomal subunit protein uS10
- Chain Sd
- Small ribosomal subunit protein uS14A
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