IL_8Y0U_216

3D structure

PDB id

8Y0U (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with STM1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

GGGAUA*UUCAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y0U_216 not in the Motif Atlas

Homologous match to IL_4V88_462

Geometric discrepancy: 0.1186

The information below is about IL_4V88_462

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8Y0U|1|C2|G|1540
8Y0U|1|C2|G|1541
8Y0U|1|C2|G|1542
8Y0U|1|C2|A|1543
8Y0U|1|C2|U|1544
8Y0U|1|C2|A|1545
*
8Y0U|1|C2|U|1566
8Y0U|1|C2|U|1567
8Y0U|1|C2|C|1568
8Y0U|1|C2|A|1569
8Y0U|1|C2|A|1570
8Y0U|1|C2|C|1571

Current chains

Chain C2

18S rRNA

Nearby chains

Chain ST

Small ribosomal subunit protein eS19A

Chain SZ

Small ribosomal subunit protein eS25A