IL_8Y0U_233

3D structure

PDB id

8Y0U (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with STM1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

CU*AAG

Length

5 nucleotides

Bulged bases

8Y0U|1|C4|A|64

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y0U_233 not in the Motif Atlas

Homologous match to IL_8C3A_143

Geometric discrepancy: 0.0953

The information below is about IL_8C3A_143

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

112

Unit IDs

8Y0U|1|C4|C|15
8Y0U|1|C4|U|16
*
8Y0U|1|C4|A|63
8Y0U|1|C4|A|64
8Y0U|1|C4|G|65

Current chains

Chain C4

5S rRNA

Nearby chains

Chain C1

Large subunit ribosomal RNA; LSU rRNA

Chain LD

Large ribosomal subunit protein uL18

Chain LI

Large ribosomal subunit protein uL16

Chain LJ

Large ribosomal subunit protein uL5B