IL_8Y0U_247

3D structure

PDB id

8Y0U (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with STM1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

GG*UUUC

Length

6 nucleotides

Bulged bases

8Y0U|1|C1|U|1820, 8Y0U|1|C1|U|1821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y0U_247 not in the Motif Atlas

Homologous match to IL_8C3A_483

Geometric discrepancy: 0.2648

The information below is about IL_8C3A_483

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25360.1

Basepair signature

cWW-cWW

Number of instances in this motif group

10

Unit IDs

8Y0U|1|C1|G|1623
8Y0U|1|C1|G|1624
*
8Y0U|1|C1|U|1819
8Y0U|1|C1|U|1820
8Y0U|1|C1|U|1821
8Y0U|1|C1|C|1822

Current chains

Chain C1

25S rRNA

Nearby chains

Chain Lg

Large ribosomal subunit protein eL34A

Chain Lk

Large ribosomal subunit protein eL38