IL_8Y0U_248
3D structure
- PDB id
- 8Y0U (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- dormant ribosome with STM1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.59 Å
Loop
- Sequence
- GGAAGUCGG*CUGUC
- Length
- 14 nucleotides
- Bulged bases
- 8Y0U|1|C1|G|2335
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8Y0U_248 not in the Motif Atlas
- Homologous match to IL_8C3A_484
- Geometric discrepancy: 0.1113
- The information below is about IL_8C3A_484
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_04332.2
- Basepair signature
- cWW-cWW-L-cWW-L-R-L-R-L-L
- Number of instances in this motif group
- 3
Unit IDs
8Y0U|1|C1|G|1898
8Y0U|1|C1|G|1899
8Y0U|1|C1|A|1900
8Y0U|1|C1|A|1901
8Y0U|1|C1|G|1902
8Y0U|1|C1|U|1903
8Y0U|1|C1|C|1904
8Y0U|1|C1|G|1905
8Y0U|1|C1|G|1906
*
8Y0U|1|C1|C|2333
8Y0U|1|C1|U|2334
8Y0U|1|C1|G|2335
8Y0U|1|C1|U|2336
8Y0U|1|C1|C|2337
Current chains
- Chain C1
- 25S rRNA
Nearby chains
- Chain LB
- Large ribosomal subunit protein uL3
- Chain LV
- Large ribosomal subunit protein uL14A
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