IL_8Y0U_249

3D structure

PDB id

8Y0U (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with STM1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

UGC*GUAAA

Length

8 nucleotides

Bulged bases

8Y0U|1|C1|A|2242, 8Y0U|1|C1|A|2243

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y0U_249 not in the Motif Atlas

Geometric match to IL_4V9F_097

Geometric discrepancy: 0.2471

The information below is about IL_4V9F_097

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

8Y0U|1|C1|U|2200
8Y0U|1|C1|G|2201
8Y0U|1|C1|C|2202
*
8Y0U|1|C1|G|2240
8Y0U|1|C1|U|2241
8Y0U|1|C1|A|2242
8Y0U|1|C1|A|2243
8Y0U|1|C1|A|2244

Current chains

Chain C1

25S rRNA

Nearby chains

Chain 5

Eukaryotic translation initiation factor 5A-1

Chain LA

Large ribosomal subunit protein uL2A