IL_8Y0U_251

3D structure

PDB id

8Y0U (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with STM1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

CAU*AUAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y0U_251 not in the Motif Atlas

Geometric match to IL_5ML7_010

Geometric discrepancy: 0.3932

The information below is about IL_5ML7_010

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

29

Unit IDs

8Y0U|1|C1|C|2444
8Y0U|1|C1|A|2445
8Y0U|1|C1|U|2446
*
8Y0U|1|C1|A|2500
8Y0U|1|C1|U|2501
8Y0U|1|C1|A|2502
8Y0U|1|C1|G|2503

Current chains

Chain C1

25S rRNA

Nearby chains

Chain Li

Large ribosomal subunit protein eL36A