IL_8Y0U_263

3D structure

PDB id

8Y0U (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with STM1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

UUCCG*UGA

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y0U_263 not in the Motif Atlas

Homologous match to IL_8P9A_271

Geometric discrepancy: 0.3776

The information below is about IL_8P9A_271

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_11415.1

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

1

Unit IDs

8Y0U|1|C1|U|1014
8Y0U|1|C1|U|1015
8Y0U|1|C1|C|1016
8Y0U|1|C1|C|1017
8Y0U|1|C1|G|1018
*
8Y0U|1|C1|U|1034
8Y0U|1|C1|G|1035
8Y0U|1|C1|A|1036

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LJ

Large ribosomal subunit protein uL5B

Chain s

Suppressor protein STM1