IL_8Y0W_028
3D structure
- PDB id
- 8Y0W (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- dormant ribosome with eIF5A, eEF2 and SERBP1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GGCCCGGC*GUCC
- Length
- 12 nucleotides
- Bulged bases
- 8Y0W|1|L5|C|502, 8Y0W|1|L5|C|503
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8Y0W_028 not in the Motif Atlas
- Geometric match to IL_3WBM_003
- Geometric discrepancy: 0.3402
- The information below is about IL_3WBM_003
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 39
Unit IDs
8Y0W|1|L5|G|499
8Y0W|1|L5|G|500
8Y0W|1|L5|C|501
8Y0W|1|L5|C|502
8Y0W|1|L5|C|503
8Y0W|1|L5|G|504
8Y0W|1|L5|G|505
8Y0W|1|L5|C|506
*
8Y0W|1|L5|G|652
8Y0W|1|L5|U|653
8Y0W|1|L5|C|654
8Y0W|1|L5|C|655
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LC
- 60S ribosomal protein L4
- Chain LQ
- 60S ribosomal protein L18
- Chain La
- 60S ribosomal protein L27a
Coloring options: