IL_8Y0W_041

3D structure

PDB id

8Y0W (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with eIF5A, eEF2 and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CCC*GGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CCC,GGG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y0W_041 not in the Motif Atlas

Geometric match to IL_3R1C_017

Geometric discrepancy: 0.1158

The information below is about IL_3R1C_017

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.1

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

39

Unit IDs

8Y0W|1|L5|C|984
8Y0W|1|L5|C|985
8Y0W|1|L5|C|986
*
8Y0W|1|L5|G|1067
8Y0W|1|L5|G|1068
8Y0W|1|L5|G|1069

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LE

60S ribosomal protein L6