IL_8Y0W_076

3D structure

PDB id

8Y0W (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with eIF5A, eEF2 and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUCU*AAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y0W_076 not in the Motif Atlas

Geometric match to IL_4V9F_053

Geometric discrepancy: 0.3416

The information below is about IL_4V9F_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86407.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

8Y0W|1|L5|G|1753
8Y0W|1|L5|U|1754
8Y0W|1|L5|C|1755
8Y0W|1|L5|U|1756
*
8Y0W|1|L5|A|1775
8Y0W|1|L5|A|1776
8Y0W|1|L5|C|1777

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LD

60S ribosomal protein L5

Chain LI

60S ribosomal protein L10-like