IL_8Y0W_101

3D structure

PDB id

8Y0W (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with eIF5A, eEF2 and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAGUGG*CGC

Length

9 nucleotides

Bulged bases

8Y0W|1|L5|G|2546

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y0W_101 not in the Motif Atlas

Geometric match to IL_7RQB_041

Geometric discrepancy: 0.2025

The information below is about IL_7RQB_041

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_43275.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

30

Unit IDs

8Y0W|1|L5|G|2542
8Y0W|1|L5|A|2543
8Y0W|1|L5|G|2544
8Y0W|1|L5|U|2545
8Y0W|1|L5|G|2546
8Y0W|1|L5|G|2547
*
8Y0W|1|L5|C|2772
8Y0W|1|L5|G|2773
8Y0W|1|L5|C|2774

Current chains

Chain L5

28S rRNA

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA

Chain Lk

60S ribosomal protein L38