IL_8Y0W_145

3D structure

PDB id

8Y0W (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with eIF5A, eEF2 and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CU*AACG

Length

6 nucleotides

Bulged bases

8Y0W|1|L5|A|4518, 8Y0W|1|L5|C|4519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y0W_145 not in the Motif Atlas

Homologous match to IL_8C3A_117

Geometric discrepancy: 0.0429

The information below is about IL_8C3A_117

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_24807.2

Basepair signature

cWW-cWW

Number of instances in this motif group

16

Unit IDs

8Y0W|1|L5|C|4458
8Y0W|1|L5|U|4459
*
8Y0W|1|L5|A|4517
8Y0W|1|L5|A|4518
8Y0W|1|L5|C|4519
8Y0W|1|L5|G|4520

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LV

60S ribosomal protein L23