IL_8Y0W_195

3D structure

PDB id

8Y0W (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with eIF5A, eEF2 and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GCCACUU*AUGCCGAC*AUGCCGAC

Length

23 nucleotides

Bulged bases

8Y0W|1|S2|C|139, 8Y0W|1|S2|C|142

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8Y0W|1|S2|G|130
8Y0W|1|S2|C|139
8Y0W|1|S2|C|140
8Y0W|1|S2|A|141
8Y0W|1|S2|C|142
8Y0W|1|S2|U|143
8Y0W|1|S2|U|144
*
8Y0W|1|S2|A|175
8Y0W|1|S2|U|176
8Y0W|1|S2|G|177
8Y0W|1|S2|C|178
8Y0W|1|S2|C|179
8Y0W|1|S2|G|180
8Y0W|1|S2|A|181
8Y0W|1|S2|C|182
*
8Y0W|1|S2|A|175
8Y0W|1|S2|U|176
8Y0W|1|S2|G|177
8Y0W|1|S2|C|178
8Y0W|1|S2|C|179
8Y0W|1|S2|G|180
8Y0W|1|S2|A|181
8Y0W|1|S2|C|182

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SG

40S ribosomal protein S6