IL_8Y0W_218

3D structure

PDB id

8Y0W (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with eIF5A, eEF2 and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUC*GC

Length

5 nucleotides

Bulged bases

8Y0W|1|S2|U|607

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y0W_218 not in the Motif Atlas

Geometric match to IL_4LFB_014

Geometric discrepancy: 0.1375

The information below is about IL_4LFB_014

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

129

Unit IDs

8Y0W|1|S2|G|606
8Y0W|1|S2|U|607
8Y0W|1|S2|C|608
*
8Y0W|1|S2|G|635
8Y0W|1|S2|C|636

Current chains

Chain S2

18S rRNA

Nearby chains

Chain S

Isoform 2 of SERPINE1 mRNA-binding protein 1

Chain SD

40S ribosomal protein S3

Chain Se

40S ribosomal protein S30