IL_8Y0W_229

3D structure

PDB id

8Y0W (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with eIF5A, eEF2 and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGC*GAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y0W_229 not in the Motif Atlas

Geometric match to IL_4V88_419

Geometric discrepancy: 0.2044

The information below is about IL_4V88_419

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

8Y0W|1|S2|C|877
8Y0W|1|S2|G|878
8Y0W|1|S2|C|879
*
8Y0W|1|S2|G|907
8Y0W|1|S2|A|908
8Y0W|1|S2|G|909

Current chains

Chain S2

18S rRNA

Nearby chains

Chain LR

60S ribosomal protein L19