IL_8Y0W_246

3D structure

PDB id

8Y0W (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with eIF5A, eEF2 and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGA*UU

Length

5 nucleotides

Bulged bases

8Y0W|1|S2|G|1207

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y0W_246 not in the Motif Atlas

Homologous match to IL_8C3A_448

Geometric discrepancy: 0.1022

The information below is about IL_8C3A_448

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.11

Basepair signature

cWW-L-cWW

Number of instances in this motif group

46

Unit IDs

8Y0W|1|S2|G|1206
8Y0W|1|S2|G|1207
8Y0W|1|S2|A|1208
*
8Y0W|1|S2|U|1691
8Y0W|1|S2|U|1692

Current chains

Chain S2

18S rRNA

Nearby chains

Chain Sa

40S ribosomal protein S26