IL_8Y0X_019

3D structure

PDB id

8Y0X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dormant ribosome with SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGUC*GCUAC

Length

9 nucleotides

Bulged bases

8Y0X|1|L5|C|1301

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y0X_019 not in the Motif Atlas

Geometric match to IL_4PHY_003

Geometric discrepancy: 0.3693

The information below is about IL_4PHY_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_99358.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

8

Unit IDs

8Y0X|1|L5|G|443
8Y0X|1|L5|G|444
8Y0X|1|L5|U|445
8Y0X|1|L5|C|446
*
8Y0X|1|L5|G|1300
8Y0X|1|L5|C|1301
8Y0X|1|L5|U|1302
8Y0X|1|L5|A|1303
8Y0X|1|L5|C|1304

Current chains

Chain L5

28S rRNA

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA

Chain Le

60S ribosomal protein L32

Chain Lf

60S ribosomal protein L35a