IL_8Y0X_020

3D structure

PDB id

8Y0X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dormant ribosome with SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GCG*UC

Length

5 nucleotides

Bulged bases

8Y0X|1|L5|C|449

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y0X_020 not in the Motif Atlas

Geometric match to IL_4C7O_003

Geometric discrepancy: 0.3783

The information below is about IL_4C7O_003

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.15

Basepair signature

cWW-L-cWW

Number of instances in this motif group

41

Unit IDs

8Y0X|1|L5|G|448
8Y0X|1|L5|C|449
8Y0X|1|L5|G|450
*
8Y0X|1|L5|U|1297
8Y0X|1|L5|C|1298

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Le

60S ribosomal protein L32

Chain Lf

60S ribosomal protein L35a