IL_8Y0X_044

3D structure

PDB id

8Y0X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dormant ribosome with SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUC*GCCCG

Length

8 nucleotides

Bulged bases

8Y0X|1|L5|C|1214, 8Y0X|1|L5|C|1215

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y0X_044 not in the Motif Atlas

Geometric match to IL_5ZTM_001

Geometric discrepancy: 0.3221

The information below is about IL_5ZTM_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

8Y0X|1|L5|C|1082
8Y0X|1|L5|U|1083
8Y0X|1|L5|C|1084
*
8Y0X|1|L5|G|1213
8Y0X|1|L5|C|1214
8Y0X|1|L5|C|1215
8Y0X|1|L5|C|1216
8Y0X|1|L5|G|1217

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LF

60S ribosomal protein L7

Chain Lb

60S ribosomal protein L29