IL_8Y0X_056

3D structure

PDB id

8Y0X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dormant ribosome with SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y0X_056 not in the Motif Atlas

Geometric match to IL_7RQB_089

Geometric discrepancy: 0.13

The information below is about IL_7RQB_089

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.10

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

33

Unit IDs

8Y0X|1|L5|C|1431
8Y0X|1|L5|G|1432
8Y0X|1|L5|A|1433
8Y0X|1|L5|G|1434
*
8Y0X|1|L5|C|1450
8Y0X|1|L5|G|1451
8Y0X|1|L5|A|1452
8Y0X|1|L5|G|1453

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LQ

60S ribosomal protein L18