IL_8Y0X_152

3D structure

PDB id

8Y0X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dormant ribosome with SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AUC*GUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y0X_152 not in the Motif Atlas

Homologous match to IL_8C3A_124

Geometric discrepancy: 0.1198

The information below is about IL_8C3A_124

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

8Y0X|1|L5|A|4590
8Y0X|1|L5|U|4591
8Y0X|1|L5|C|4592
*
8Y0X|1|L5|G|4618
8Y0X|1|L5|U|4619
8Y0X|1|L5|U|4620

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LV

60S ribosomal protein L23