IL_8Y0X_162

3D structure

PDB id

8Y0X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dormant ribosome with SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CCUCGGAUAG*UGCGGAGUG

Length

19 nucleotides

Bulged bases

8Y0X|1|L5|C|4757, 8Y0X|1|L5|U|4758, 8Y0X|1|L5|A|4764, 8Y0X|1|L5|G|4870, 8Y0X|1|L5|G|4873, 8Y0X|1|L5|U|4876

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8Y0X|1|L5|C|4756
8Y0X|1|L5|C|4757
8Y0X|1|L5|U|4758
8Y0X|1|L5|C|4759
8Y0X|1|L5|G|4760
8Y0X|1|L5|G|4761
8Y0X|1|L5|A|4762
8Y0X|1|L5|U|4763
8Y0X|1|L5|A|4764
8Y0X|1|L5|G|4765
*
8Y0X|1|L5|U|4869
8Y0X|1|L5|G|4870
8Y0X|1|L5|C|4871
8Y0X|1|L5|G|4872
8Y0X|1|L5|G|4873
8Y0X|1|L5|A|4874
8Y0X|1|L5|G|4875
8Y0X|1|L5|U|4876
8Y0X|1|L5|G|4877

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LE

60S ribosomal protein L6

Chain LH

60S ribosomal protein L9

Chain LM

60S ribosomal protein L14

Chain LO

60S ribosomal protein L13a

Chain LS

60S ribosomal protein L18a