IL_8Y0X_186

3D structure

PDB id

8Y0X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dormant ribosome with SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAAA*UGACG

Length

9 nucleotides

Bulged bases

8Y0X|1|S2|A|516

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y0X_186 not in the Motif Atlas

Geometric match to IL_4WF9_016

Geometric discrepancy: 0.31

The information below is about IL_4WF9_016

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.1

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

44

Unit IDs

8Y0X|1|S2|C|37
8Y0X|1|S2|A|38
8Y0X|1|S2|A|39
8Y0X|1|S2|A|40
*
8Y0X|1|S2|U|514
8Y0X|1|S2|G|515
8Y0X|1|S2|A|516
8Y0X|1|S2|C|517
8Y0X|1|S2|G|518

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SE

40S ribosomal protein S4, X isoform

Chain SJ

40S ribosomal protein S9